1 Read data from image analysis

2 Check image results

During image processing the detected objects are checked for:

  1. whether the plant is completely in frame (top row)

  2. whether the plants are unique (bottom row)

3 Subset Valid data

For subsequent plots we will remove invalid datapoints based on the quality checks above. These are saved as the “level1” dataset.

4 Plant Area

5 YII

5.1 Steady-state YII

6 NPQ

6.1 Steady-state NPQ

7 Treatment Effects

7.1 How does each genotype respond to the treatment compared to control conditions?

7.1.1 Plant Area

7.1.2 YII

7.1.2.1 Steady-state YII

7.1.3 NPQ

7.1.3.1 Steady-state NPQ

7.2 How does each mutant respond to the treatment compared to WT?

7.2.1 Plant Area

7.2.2 YII

7.2.2.1 Steady-state YII

7.2.3 NPQ

7.2.3.1 Steady-state NPQ

8 Compilation for Manuscript